Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKSLPGVADLRLGANHPRMWTRRVQGTVVNVGVKVLPWIPTPAKRILSAGRSVIIDGNTLDPTLQLMLSTSRIFGVDGLAVDDDIVASRAHMRAICEAMP----GPQIHVDVTDLSIPGPAGEIPARHYRPSG-GGATPLLVFYHGGGWTLGDLDTHDALCRLTCRDADIQVLSIDYRLAPEHPAPAAVEDAYAAFVWAHEHASDEFGALPGRVAVGGDSAGGNLSAVVCQLARDKARYEGGPTPVLQWLLYPRTDFTAQTRSMGLFGN--GFLLTKRDIDWFHTQYLRDSDVDPADPRLSPLLAESLSGLAPALIAVAGFDPLRDEGESYAKALRAAGTAVDLRYLGSLTHGFLNLFQLGGGSAAGTNELISALRAHLSRV |
| 1U4N Chain:A ((3-310)) | ------------------------------------------------------------LDPVIQQVLDQ-----LNRMPAPDYKHLSAQQFRSQQSLFPPVKKEPVAEVREFDMDLPGRTLKV--RMYRPEGVEPPYPALVYYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEHKFPAAVEDAYDALQWIAERAAD-FHLDPARIAVGGDSAGGNLAAVTSILAKER----GGPALAFQLLIYPSTGYDPAHPPASIEENAEGYLLTGGMSLWFLDQYL-NSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPLRDVGKLYAEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDALA-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U4N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -148351 for 2630 contacts (-56.4/contact) +
2D Compatibility (PS) -32725 + (NN) -20475 + (LL) 4720
1D Compatibility (HY) -20000 + (ID) 6600
Total energy: -223431.0 ( -84.95 by residue)
QMean score : 0.416
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