Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKGGFNLSDWALRHQSLVWYLMAVSLVMGVFSYLNLGREEDPSFAIKTMVIQTRWPGATVDDTLEQVTDRIEKKLEELDSLDYVK-SYTRPGESTV-FVYLKDTTKAGDIPDIWYQVRKKISDIQGEFPQGIQGPGFN-DEFGDVFGSVYAFTADGLDFRQLRDYVEK-VRLDIRSVKDLGKVQMIGAQNEV-IYLNFSTRKLAALGLDQRQVVQSLQAQNAVTPSGVVEAGPE------RISVRTSGNFRSEKDLQAVNLRVN---DRFYRLSDLASISRDFVDPPTSLFRYKGEPAIGLAVAMKEGGNILEFGEALNARMQEITGELPVGVGVHQVSNQAQVVKKAVGGFTRALFEAVVIVLIVSFVSL-GLRAGLVVACSIPLVLAMVFVFMEYTDITMQRVSLGALIIALGLLVDDAMITVEMMITRLELGDSL--HDSATYAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVALLLSWIVAVLFAPVIAVHILPKTLKHKSEQKKGRIA---ERFDSLLH-------LAMRRRWTTIFLTALLFGVSLFLMKFVQHQFFPSSDRPELLVDLNLPQNSSIHETRAVM---DRLEATLKDDEDIDHWSAYVGEGAIRFYLPLDQQLQNNFYGQLVIVTKDLEARE-------RVAARLRDRLR---KDYVGISTYVQP-LEMGPPVGRPIQYRVSGPQ------------IDKVREYAMGL-------AGVLDGNPNIGDIVYDWNEPGKMLKIDIAQDKARQLGLSSEDVAQIMNSVVTGSAVTQVRDDIYLVNVIGRAEDSERGSLETLESLQIVTPSGTSIPLKAFAKVSYELEQPLVWRRDRKPTITVKASLRGEIQPTDLVARLAPEVKRFADGLPANYRIEVGGTVEESGKAEGPIAKVVPLMLFLMATFLMIQ--LQSVQKLFLVASVAPLGLIGVVAALLPTGTPMGFVAI-----------LGILALIGIIIRNSVILVTQIDAFEKDGKTPWEAVLEATHHRTRPILLTAAAASLGMIP--------------IAREVFWGPMAYAMIGGIVAATLLTLIFLPALYVAWYRIPEPGR |
| 4MT1 Chain:A ((11-1034)) | ----------------FAWVISIFIIAAGIFGIKSLPVSQYPSVAAPTITLHAIYPGASAQVMEGSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDE--NLAQV--EVQNKLSEVLSTLPATVQQYGVTVSKARSNFLMIVMLSSDVQSTEEMNDYAQRNVVPELQRIEGVGQVRLFGAQRAMRIWVD--PKKLQNYNLSFADVGSALSAQNIQISAGSIGSLPAVRGQTVTATVTAQGQLGTAEEFGNVILRANTDGSNIY-LKDVAKVGLGMEDYSSST-RLNGVNTTGMAVMLSNSGNAMATAKAVKERLAVLEKYFPQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMILVIGIVVDDAIVVVE-NVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMFSGAAGNIYKQFALTMASSIAFSAFLALTLTPALCAT--------------GFFGWFNKKFDSWTHGYEGRVAKVLRKTFRMMVVYIGLAVVGVFLFMRLPTSFLPTEDQGFVMVSVQLPAGATKERTDATLAQVTQLAKSIPEIENIITVSGFSFSGS-------GQNMAMGF-----AIFKDWNERTASGSDAVAVAGKLTGMMMGTLKDGFGIAVVPPPILELG--SGLSINLQDRNNTGHTALLAKRNELIQKMR--ASGLFDPSTVRAGGLEDSPQ--------------LKIDINRAAAAAQGISFADIRTALASALSSSYVSDFPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNGYPSMKLSASPATGVS----TGQAMEAVQKMVDELGGGYSFEWGG--QSSEEAKGGSQTLILYGLAVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQVGFVTVMGLSAKNAILIIEFAKDLQAQGKSAVEAALEAARLRFRPIIMTSFAFILGVVPLYIAAGASSASQRAIGTTVFW---------GMLVGTLLSVFLVPLFYVVVRKFF---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MT1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -545167 for 7681 contacts (-71.0/contact) +
2D Compatibility (PS) -97940 + (NN) -39783 + (LL) 5392
1D Compatibility (HY) -70800 + (ID) 12300
Total energy: -760598.0 ( -99.02 by residue)
QMean score : 0.371
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