Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSPYILVLYYSRHGATAEMARQIARGV-EQGGFEARVRTVPAVSTECEAVAPDIP----AEGAL-YATLEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGIPYSEPAL--LETRGGGTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLGS
4LAF Chain:A ((5-205))
-----IQIVFYSSYGHIYKMAEAIAAGAREVGDVEVTLLQVPELMPEEVQVKSGIKGYRAAFGSIPYATPEVLAEADAIIFGTPTRFGNMCSQMRNFLDQTGGLWMSGGLIGKVGSVFTSTASQHGGQETTITSFHTTLLHHGMVIVGVPYSEPGLTNMTEISGGTPYGASTLAGADGSRQPSENELQIARFQGKHVATIAKRLAN
General information:
TITO was launched using:
RESULT:
Template:
4LAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93258 for 1650 contacts (-56.5/contact) +
2D Compatibility (PS) -21087 + (NN) -12942 + (LL) 104
1D Compatibility (HY) -13600 + (ID) 4700
Total energy: -145483.0 ( -88.17 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_4LAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LAF-query.scw
PDB file :
Tito_Scwrl_4LAF.pdb
: