Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAESAFSERIVQNLLDTDFYKLTMMQAVLHNYPNAEVEWEFRCRNQ-EDLRLYLP----AIREQLEYLAGLAISDEQLAFLE------RIPFLAPDFIRFLGLFRFNPRYVQTGIENDEFFLRLKGPWLHVILFEVPLLAMISEVRNRARYPA-------ATVEQARERLQEKFDWLRREASAEELAGFKMADFGTRRRFSYRVHEAVVSGLKEDFPGCFVGTSNVHLARKLDLKPLGTMAHEWLM---AHQQLGPRLIDSQSAALDCWVREYRGLLGIALTDCITTDAFLRDFDLYFAKLFDGLRHDSGDPLLWAEKTIAHYLKLGIDPLTKTLVFSDGLDLPRALKIYRALQGRINVSFGIGTHFTCDLPG---VEPMNIVVKMSACNGHPVAKISDTPGKAQCRDPDFIHYLKHVFQVA |
| 1YBE Chain:A ((27-427)) | ---------IVRSLIDTDFYKLLMLQMIWKLYP--EVDATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSKKENIWLAGNTFYGRSQIFEPEFLSWLSSYQL-PEY-ELFKRDGQYELNFHGRWMDTTLWEIPALSIINELRSRSAMRSLGYFTLDVLYARAKAKMWEKVERLR------ELPGLRISDFGTRRRHSFLWQRWCVEALKEGIGPAFTGTSNVLLAMDSDLEAVGTNAHELPMVVAALAQTNEELAAAPYQVLKDWNRLYGGNLLIVLPDAFGTAAFLRNAPEWVAD-WTGFRPDSAPPIEGGEKIIEWWRKMGRDPRTKMLIFSDGLDVDAIVDTYRHFEGRVRMSFGWGTNLTNDFAGCAPLKPISIVCKVSDANGRPAVKLSDNPQKATGDPAEVERYLK------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YBE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -264999 for 3042 contacts (-87.1/contact) +
2D Compatibility (PS) -39970 + (NN) -17544 + (LL) 2624
1D Compatibility (HY) -27600 + (ID) 7400
Total energy: -354889.0 ( -116.66 by residue)
QMean score : 0.495
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