Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
1MWD Chain:A ((1-153))
-GLSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGNTVLTALGGILKKKGHHEAELTPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFRNDMAAKYKELGFQG
General information:
TITO was launched using:
RESULT:
Template:
1MWD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60491 for 1125 contacts (-53.8/contact) +
2D Compatibility (PS) -16642 + (NN) -10883 + (LL) 208
1D Compatibility (HY) -18000 + (ID) 7150
Total energy: -112958.0 ( -100.41 by residue)
QMean score : 0.633
(partial model without unconserved sides chains):
PDB file :
Tito_1MWD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MWD-query.scw
PDB file :
Tito_Scwrl_1MWD.pdb
: