Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTHGTAVCTRTYEKEA
1HMS Chain:A ((1-131))
-VDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTHGTAVCTRTYEKE-
General information:
TITO was launched using:
RESULT:
Template:
1HMS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36292 for 914 contacts (-39.7/contact) +
2D Compatibility (PS) -14655 + (NN) -3642 + (LL) 352
1D Compatibility (HY) -17600 + (ID) 6550
Total energy: -78387.0 ( -85.76 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_1HMS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HMS-query.scw
PDB file :
Tito_Scwrl_1HMS.pdb
: