Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKCLLLALALTCGAQALIVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQKWENGECAQKKIIAEKTKIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEALEKFDKALKALPMHIRLSFNPTQLEEQCHI
1GXA Chain:A ((2-162))
-----------------IVTQTMKGLDIQKVAGTWYSLAMAASDISLLDAQSAPLRVYVEELKPTPEGDLEILLQKWENGECAQKKIIAEKTKIPAVFKIDALNENKVLVLDTDYKKYLLFCMENSAEPEQSLACQCLVRTPEVDDEALEKFDKALKALPMHIRLSFNPTQLEEQCHI
General information:
TITO was launched using:
RESULT:
Template:
1GXA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104136 for 1222 contacts (-85.2/contact) +
2D Compatibility (PS) -16388 + (NN) 1363 + (LL) 2016
1D Compatibility (HY) -23600 + (ID) 8050
Total energy: -148795.0 ( -121.76 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_1GXA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GXA-query.scw
PDB file :
Tito_Scwrl_1GXA.pdb
: