Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS
1L8S Chain:A ((1-124))
----------------------ALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNLDSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC--
General information:
TITO was launched using:
RESULT:
Template:
1L8S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73873 for 919 contacts (-80.4/contact) +
2D Compatibility (PS) -13293 + (NN) -8712 + (LL) 2308
1D Compatibility (HY) -17200 + (ID) 5050
Total energy: -115820.0 ( -126.03 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_1L8S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L8S-query.scw
PDB file :
Tito_Scwrl_1L8S.pdb
: