Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NLYQFKNMIKCTVPSRSWWDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAEKISGCWPYFKTYSYECSQGTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDNNYNIDLKARCQ
1OXR Chain:A ((1-118))
NLYQFKNMIQCTVPSRSWQDFADYGCYCGKGGSGTPVDDLDRCCQVHDNCYNEAENISGCRPYFKTYSYECTQGTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDANYNIDLKARC-
General information:
TITO was launched using:
RESULT:
Template:
1OXR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70088 for 873 contacts (-80.3/contact) +
2D Compatibility (PS) -13000 + (NN) -8544 + (LL) 120
1D Compatibility (HY) -16000 + (ID) 5550
Total energy: -113062.0 ( -129.51 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_1OXR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXR-query.scw
PDB file :
Tito_Scwrl_1OXR.pdb
: