Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLLLLAASIMAFGSIQVQGNIAQFGEMIRLKTGKRAELSYAFYGCHCGLGGKGSPKDATDRCCVTHDCCYKSLEKSGCGTKLLKYKYSHQGGQITCSANQNSCQKRLCQCDKAAAECFARNKKTYSLKYQFYPNMFCKGKKPKC
1DB4 Chain:A ((1-124))
---------------------NLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITC-AKQDSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC
General information:
TITO was launched using:
RESULT:
Template:
1DB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31235 for 916 contacts (-34.1/contact) +
2D Compatibility (PS) -13285 + (NN) -6217 + (LL) 2352
1D Compatibility (HY) -14000 + (ID) 4250
Total energy: -66635.0 ( -72.75 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_1DB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DB4-query.scw
PDB file :
Tito_Scwrl_1DB4.pdb
: