Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
2ODB Chain:A ((3-137))
-QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
General information:
TITO was launched using:
RESULT:
Template:
2ODB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57682 for 963 contacts (-59.9/contact) +
2D Compatibility (PS) -14759 + (NN) -8750 + (LL) 208
1D Compatibility (HY) -20400 + (ID) 6750
Total energy: -108133.0 ( -112.29 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_2ODB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ODB-query.scw
PDB file :
Tito_Scwrl_2ODB.pdb
: