Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
1I4T Chain:D ((2-178))
-QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC-------------
General information:
TITO was launched using:
RESULT:
Template:
1I4T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126552 for 1398 contacts (-90.5/contact) +
2D Compatibility (PS) -19249 + (NN) -12638 + (LL) 792
1D Compatibility (HY) -24400 + (ID) 6300
Total energy: -188347.0 ( -134.73 by residue)
QMean score : 0.656
(partial model without unconserved sides chains):
PDB file :
Tito_1I4T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1I4T-query.scw
PDB file :
Tito_Scwrl_1I4T.pdb
: