Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPIPNNPGAGENAFDPVFVNDDDGYDLDSFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYNNEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEHYVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCLVNDEGKKKYKATSL
1QK4 Chain:A ((13-232))
-------GKGKGRIEPMYIPDNTFYNADDFLVPPHCKPYIDKILLPGGLVKDRVEKLAYDIHRTYFGEELHIICILKGSRGFFNLLIDYLATIQKYSGRESSVPPFFEHYVRLKSYQ-----GQLTVLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVEKRTDRSNSLKGDFVGFSIEDVWIVGCCYDFNEMFRDFDHVAVLSDAARKKFE----
General information:
TITO was launched using:
RESULT:
Template:
1QK4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -206165 for 1706 contacts (-120.8/contact) +
2D Compatibility (PS) -22900 + (NN) -7594 + (LL) 164
1D Compatibility (HY) -25200 + (ID) 5450
Total energy: -267145.0 ( -156.59 by residue)
QMean score : 0.715
(partial model without unconserved sides chains):
PDB file :
Tito_1QK4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QK4-query.scw
PDB file :
Tito_Scwrl_1QK4.pdb
: