Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAAGRLFLSRLRAPFSSMAKSPLEGVSSSRGLHAGRGPRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGTQKACTAQSLGNLLDMMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREVNTFVKNL
1P62 Chain:B ((23-263))
------------------------------------RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQST---------NGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKD---KYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
1P62.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126686 for 1733 contacts (-73.1/contact) +
2D Compatibility (PS) -23741 + (NN) -2482 + (LL) 2948
1D Compatibility (HY) -26800 + (ID) 6000
Total energy: -182761.0 ( -105.46 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_1P62.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P62-query.scw
PDB file :
Tito_Scwrl_1P62.pdb
: