Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASLSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASILNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCP-LLFGFNTTGDPTV----CSI---SNPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKRI-------------------LTRQNSQCNSVRPGFPQQTLSPDPAHLE-LKRYYSICQDTALGGPGFQERGGELKR-EEKTRNSLSPTIAPKLSLEVRKLSNGRLSTSLKLGPLQPRGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSC |
| 4U15 Chain:A ((22-398)) | --------------------------------------LALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMN-LFTTYIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYR---AKRTTKRAGVMIGLAWVISFVLWAPAILFWQYFVGKRTVPPGECFIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIY---KETEKMNIFEMLRIDEGGGSGGDEAEKLFNQDVDA-AVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWD--AYLIKEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDSC-IPKTYWNLGYWLCYINSTVNPVCYALCNKTFRTTFKTL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U15.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199370 for 2595 contacts (-76.8/contact) +
2D Compatibility (PS) -34803 + (NN) 753 + (LL) 2964
1D Compatibility (HY) -32000 + (ID) 5150
Total energy: -267606.0 ( -103.12 by residue)
QMean score : 0.226
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