Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNASAASLNDSQVVVVAAEGAAAAATAAGGPDTGEWGPPAAAALGAGGGANGSLELSSQLSAGPPGLLLPAVNPWDVLLCVSGTVIAGENALVVALIASTPALRTPMFVLVGSLATADLLAGCGLILHFVFQYLVPSETVSLLTVGFLVASF-------------AASVSSLLAITVDRYLSLYNALTYYSRRTLLGVHLLLAATWTVSLGLGLLPV-LGW---------NCLAERAACSVVRPLARSHVALLSAAFFMVFGIMLHLYVRICQVVWRHAHQI--ALQQHCLAPPHLAATRKGVGTLAVVLGTFGASWLPFAIYCVVGSHEDPAVYTYATLL---PATYNSMINPIIYAFRNQEIQRALWLLLCGCFQSKVPFRSRSPSEV |
| 4LDO Chain:A ((200-462)) | -----------------------------------------------------------------------------------------NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAV---------VPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYA-IASSIVSFYVPLVIMVFVYSRVFQEAKRQLQ--KFALKEH-----------KALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCL---------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4LDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -171787 for 1578 contacts (-108.9/contact) +
2D Compatibility (PS) -23889 + (NN) -9208 + (LL) 6712
1D Compatibility (HY) -22400 + (ID) 3900
Total energy: -224472.0 ( -142.25 by residue)
QMean score : 0.171
|
|
|