Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQGNGSALPNASQPVLRGDGARPSWLASALACVLIFTIVVDILGNLLVILSVYRNKKLRNAGNIFVVSLAVADLVVAIYPYPLVLMSIFNNGWNLGYLHCQVSGFLMGLSVIGSIFNITGIAINRYCYICHSLKYDKLYSSKNSLCYVLLIWLLT-LAAVLPNLRAGTLQYDPRIYSCTFAQS-----VSSAYTIAVVVFHFLVPMIIVIFCYLRIWILVLQVRQRV-KPDRKPKLKP----QDFRNFVTMFVVFVLFAICWAPLNFIGLAVASDPASMVPRIPEWLFVASYYMAYFNSCLNAIIYGLLNQNFRKEYRRIIVSLCTARVFFVDSSNDVADRVKWKPSPLMTNNNVVKVDSV |
| 2YCY Chain:A ((12-297)) | ---------------------------AGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVY---REAKEQIR--DRASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNR----DLVPDWLFVAFNWLGYANSAMNPIIY-CRSPDFRKAFKRLLAF-------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -269420 for 1995 contacts (-135.0/contact) +
2D Compatibility (PS) -27716 + (NN) -6791 + (LL) 3852
1D Compatibility (HY) -28800 + (ID) 3850
Total energy: -332725.0 ( -166.78 by residue)
QMean score : 0.317
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