Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPTFNGSVFMPSAFILIGIPGLESVQCWIGIPFSAMYLIGVIGNSLILVIIKYENSLHIPMYIFLAMLAATDIALNTCILPKMLGIFWFHLPEISFDA----CLFQMWLIHSFQAIESGILLAMALDRYVAICIPLRHATIFSQQFLTH-IGLGVTLRAAILIIPSLGLIKCCLKHYRTTVISHSYCEHMAIVKLATEDIRVNKIYGLFVAFAILGFDIIFITLSYVQIFITV-FQLPQKEARFKAFNTCIAHI--------------CVFLQFYLLAFFSFFTHRFGSHIP---PYIHILLSNLYLLVPPFLNPIVYGVKTKQIRDHIVKVFFFKKVT |
4UG2 Chain:A ((15-302)) | ----------------------------------AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIAI------STGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGK---AHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQL--------ARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC-SHAPLWLMYLAIVLSHTNSVV----NPFIYAYRIREFRQTFRKIIRSHVLR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UG2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -249455 for 1918 contacts (-130.1/contact) +
2D Compatibility (PS) -25280 + (NN) -1349 + (LL) 3284
1D Compatibility (HY) -23600 + (ID) 3550
Total energy: -299950.0 ( -156.39 by residue)
QMean score : 0.240
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