Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAQVRALHKIMALFSANSIGAMNNSDTRIAGCFLTGI-PGLEQLHIW---LSIPFCIMYITALEGNGILICVILSQAILHEPMYIFLSMLASADVLLSTTTMPKALA----------NLWLGYSLISFDG-CLTQMFFIHFLFIHSAVLLAMAFDRYVAICSPLRYVTILTSKVIGKIVTAALSHSFIIMFPSIFLLEHLHYCQINIIAHTFCEHMGIAHLSCSDISINVWYGLAAALLSTGLDIMLITVSYIHILQAVFRLLSQDAR-----SKALSTCGSHICVILLFYVPALFSVFAYRFGGRSVPCYVHILLASLYVVIPPMLNPVIYGVRTKPILEGAKQMFSNLAKGSK |
4LDO Chain:A ((135-447)) | LQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEF-WTSIDVLCVTASI---------ETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMV----WIVSGLTSFLPIQMHWYRATHQEAINC----YAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQ---KFALKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYV-NSGFNPLIYCRSPDFRIAFQELLCL------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -280623 for 2033 contacts (-138.0/contact) +
2D Compatibility (PS) -29476 + (NN) -4542 + (LL) 2052
1D Compatibility (HY) -20800 + (ID) 3650
Total energy: -337039.0 ( -165.78 by residue)
QMean score : 0.197
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