Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEIDNQTWVREFILLGLSSDWCTQISLFSLFLVTYLMTVLGNCLIVLLIRLDSRLHTPMYFFLTNLSLVDVSYATSVVPQLLAHFLAEHKAIPFQSCAAQLFFSLAL----GGIEFVLLAVMAYDRHVAVSDRLRYSAIMHGGLCARLAITSWVSGSINSLVQTAITFQLPMCTNKFIDHISCELLAVVRLACVDTSSNEAAIMVSSIVLLMTPFCLVLLSYIRII----STILKIQSREGRK--------KAFHTCASHLTVVALCYGTTIFTYIQPHSGPSVLQEKLISVF--YAIVMPLLNPVIYSLRNKEVKGAWHKLLEKFSGLTSKLGT |
| 2YCY Chain:A ((10-297)) | --------------------WEAGMSLLMALVV--LLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVP--FGATLVVRGTWLWGSFLCELWTSLDVLCVTASIE--TLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVW---AISALVSF-----LPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIR--DRASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAF---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -222876 for 1911 contacts (-116.6/contact) +
2D Compatibility (PS) -27322 + (NN) -8877 + (LL) 4036
1D Compatibility (HY) -28000 + (ID) 3700
Total energy: -286739.0 ( -150.05 by residue)
QMean score : 0.245
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