Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MENYNQTSTDFILLGLFPPSRIDLFFFILIVFIFLMALIG---NLSMILLIFLDTHLHTPMYFLLSQLSLIDLNYISTIVPKMASDFLHGNKSISFTGCGIQSFFFLALGGAEALL-LASMAYDRYIAICFPLHYLIRMSKRVCVLMITGSWIIGSINACAHTVYVLHIPYCRSRAINHFFCDVPAMVTLAC-MDTWV-YEGTVFLSATIFL-----VFPFIGISCSYGQVLFAVYHMKSAEGRKKAYLTCSTHLT------VVTF------YYAPFVYTYLRPRSLRSPTEDKVLAVFYTILTPMLNPIIYSLRNKEVMGALTRVSQRICSVKM |
| 3C9M Chain:A ((37-312)) | -------------------------FSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFF-ATLGGEIALWSLVVLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVMAL--ACAAPPLVGWSRY------------IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPA-FFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNP-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C9M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -205740 for 1911 contacts (-107.7/contact) +
2D Compatibility (PS) -24937 + (NN) 2614 + (LL) 3252
1D Compatibility (HY) -22000 + (ID) 3450
Total energy: -250261.0 ( -130.96 by residue)
QMean score : 0.214
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