Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQAVDNLTSAPGNTSLCTRDYKITQVLFPLLYTVLFFVGLITNGLAMRI---FFQIRSKSNFIIFLKNTVISDLLMILTFPFKILSDAKLGTGPLRTFVCQVTSVIFYFTMYISISFLGLITIDRYQKTTRPFKTSNPKNLLGAKILSVVIWAFMFLLSLPNMILTNRQPRDKNVKKCSFLKSEFGLVWHEIVNYICQVIFW--INFLIVIVCYTLITKELYRSYVRTRGVGKVPR--KKVNVKVFIIIAVFFICFVPFH-------FARIPYTLSQTRDVFDCTAENTLFYVKESTLWLTSLNACLDPFIYFFLCKSFRNSLISMLKCPNSATSLSQDNRKKEQDGGDPNEETPM |
| 5C1M Chain:A ((15-293)) | ----------------------VTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIF--NLALADALATSTLPFQSV-NYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSI-DCTLTFSHPTWYWENLLK-ICVFIFAFIMPVLIITVCYGLMILRL-KSVRMLSGSKEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIA-------------LGYTNSCLNPVLYAFLDENFKRCF--------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5C1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -222356 for 1927 contacts (-115.4/contact) +
2D Compatibility (PS) -26357 + (NN) 133 + (LL) 3324
1D Compatibility (HY) -28000 + (ID) 4100
Total energy: -277356.0 ( -143.93 by residue)
QMean score : 0.250
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