Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MENETVSELNQTQLQPRAVVALEYQVVTILLVLIICGLGIVGNIMVVLVVMRTKHMRTPTNCYLVSLAVADLMVLVAAGLPNITDSIYGSWVYGYVGCLCITYLQYLGINASSCSITAFTIERYIAICHPIKAQFLCTFSRAKKIIIFVWAFTSLYCML-----WFFLLDLN-ISTYKDAIVISCGYKISRNYYSPIYLMDFGVFYVVPMILATVLYGFIARILFLNPIPSDPKENSKTWKNDSTHQNTNLNVNTSNRCFNSTVSSRKQVTKMLAVVVILFALLWMPYRTLVVVNSFLSSPFQENWFLLFCRICIYLNSAINPVIYNLMSQKFRAAFRKLCNCKQKPTEKPANYSVALNYSVIKESDHFSTELDDITVTDTYLSATKVSFDDTCLASEVSFSQS |
2Y00 Chain:A ((9-300)) | ----------------------QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDP--GCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVY-------------REAKEQ------------SRVMLMREHKAL-----------KTLGIIMGVFTLCWLPFFLVNIVNVF-NRDLVPDWLFVAFNWLGYANSAMNPIIY-CRSPDFRKAFKRLLA-------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2Y00.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -261549 for 2021 contacts (-129.4/contact) +
2D Compatibility (PS) -27395 + (NN) 994 + (LL) 8088
1D Compatibility (HY) -27600 + (ID) 4100
Total energy: -311562.0 ( -154.16 by residue)
QMean score : 0.261
|
|
|