Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------VTCGQVVSM--LAPCIMYATGRV-----------------SAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRP-----------DLVAGIPSKCGVNIPYA---ISPSTDCSRVH
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEM--------ENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS---
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30580 for 501 contacts (-61.0/contact) +
2D Compatibility (PS) -7992 + (NN) 950 + (LL) 908
1D Compatibility (HY) -2000 + (ID) 900
Total energy: -39614.0 ( -79.07 by residue)
QMean score : -0.007
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: