Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------LTPCEEATN---LLTPCLRYLWAPPEAKPSP-----------ECCSGLDKVNKGVKTYDDRHDMCICLSSEAAITSAD--------QYKFDNLPKLCNVALFAPVGPKFDCSTIKV
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD----------EKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-------SQPCQM---
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35857 for 476 contacts (-75.3/contact) +
2D Compatibility (PS) -7781 + (NN) -5475 + (LL) 936
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -53377.0 ( -112.14 by residue)
QMean score : 0.351
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: