Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACDALQLSPCASAIIGNASPSASCCSRMKE-----------QQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVPSC
1SIY Chain:A ((7-78))
---QGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR-GINPNNAEALPGKCGVNIP--
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18028 for 395 contacts (-45.6/contact) +
2D Compatibility (PS) -5994 + (NN) 1107 + (LL) 252
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -26563.0 ( -67.25 by residue)
QMean score : 0.284
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: