Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCSPM--QLSPCATAITSSSPPSALCCAKLKE-----------QRPCLCGYMRNPSLRRF--VSTPNARKVSKSCKLPIPRC
2ALG Chain:A ((2-79))
ITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNC--LKQLS-ASVPGVNPNNAAALPGKCGVSIP--
General information:
TITO was launched using:
RESULT:
Template:
2ALG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19686 for 382 contacts (-51.5/contact) +
2D Compatibility (PS) -6497 + (NN) -2189 + (LL) 252
1D Compatibility (HY) -6400 + (ID) 850
Total energy: -35370.0 ( -92.59 by residue)
QMean score : 0.304
(partial model without unconserved sides chains):
PDB file :
Tito_2ALG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ALG-query.scw
PDB file :
Tito_Scwrl_2ALG.pdb
: