Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------APRGAHGAGECGRTPADEMALKLAPCASAGQDPNSAPSSG---------------------CCTAVRTIGKQSPKCLCAVMLSDTAKSAGIKP----------EAAISIPKRCNLVDRPVGYKCGAYTLP
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRK---DLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14891 for 640 contacts (-23.3/contact) +
2D Compatibility (PS) -9100 + (NN) -5542 + (LL) 692
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -31191.0 ( -48.74 by residue)
QMean score : 0.223
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: