Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------GPAGCQDDVVALN--EACYQYVQKGAPTVPPS----------QECCDAVKSVDVPCVCSYLGS------PGVRDNISMEKVFYVSQQCGVSIPGNCGGSMV
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-SQPCQM---
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28642 for 487 contacts (-58.8/contact) +
2D Compatibility (PS) -8457 + (NN) -5259 + (LL) 576
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -45332.0 ( -93.08 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: