Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ISCGQVNSALAPCIPFLTKGGAPPPACCSGVRGLLGALRTTA----------DRQAACNCLK---------AAAGSLRGLNQGNAAA-LPGRCGVSI-PYKISTSTNCATIKF-----
2D5R Chain:B ((24-139))
HMQLEIQVALNFIISYLY--NKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRCIHIGEKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQIGEKGPVKVLYVD
General information:
TITO was launched using:
RESULT:
Template:
2D5R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43964 for 573 contacts (-76.7/contact) +
2D Compatibility (PS) -9416 + (NN) -2538 + (LL) -108
1D Compatibility (HY) -4800 + (ID) 850
Total energy: -61676.0 ( -107.64 by residue)
QMean score : 0.347
(partial model without unconserved sides chains):
PDB file :
Tito_2D5R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D5R-query.scw
PDB file :
Tito_Scwrl_2D5R.pdb
: