Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ------------AISCGQVSSA--LRPCISYA-----------------SGNGGILPPACCSGVKRLAG------AAQSTADKQAVCKCIKSAAAGLNAGKAAGIPSKCGVSVPYS---ISTSVDCSKIH |
1W2Q Chain:A ((1-127)) | GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1W2Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -26183 for 504 contacts (-52.0/contact) +
2D Compatibility (PS) -8472 + (NN) 4428 + (LL) 312
1D Compatibility (HY) 0 + (ID) 700
Total energy: -30615.0 ( -60.74 by residue)
QMean score : 0.134
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