Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------ITCGQVDSDLTSCLGYARKGGVI----PPGCCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR----
2DGZ Chain:A ((1133-1245))
GSSGSSGSSQPVISAQEQETQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAPLWEVIKHFCQTNSVQTDLFSSTKPQSGPSSG
General information:
TITO was launched using:
RESULT:
Template:
2DGZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26917 for 619 contacts (-43.5/contact) +
2D Compatibility (PS) -8871 + (NN) -501 + (LL) 0
1D Compatibility (HY) 800 + (ID) 750
Total energy: -36239.0 ( -58.54 by residue)
QMean score : 0.243
(partial model without unconserved sides chains):
PDB file :
Tito_2DGZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DGZ-query.scw
PDB file :
Tito_Scwrl_2DGZ.pdb
: