Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----EPAPAPAPGEEACGKVVQD--IMPCLHFVKGE---------------------EKEPSKECCSGTKKLSEEVKTTEQKREACKCIVRATKGISGIKN-------ELVAEVPKKCDIKTTLPPITADFDCSKIQST
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDE-----CQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN----------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4920 for 643 contacts (-7.7/contact) +
2D Compatibility (PS) -8901 + (NN) -1035 + (LL) 884
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -17572.0 ( -27.33 by residue)
QMean score : 0.224
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: