Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------AITCGTVVTR--LTPCLTFLRSGG----------------------AVAPACCNGVKALNNDAKTTPDRQAACGCLKTA--STSISGIQLGNAASLAGKCGVNLPYKISPTIDCSKVK
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVR-CMRQTRTN------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21643 for 628 contacts (-34.5/contact) +
2D Compatibility (PS) -8263 + (NN) 1531 + (LL) 448
1D Compatibility (HY) -1600 + (ID) 950
Total energy: -30477.0 ( -48.53 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: