Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------VTCGQV--SSSLAPCIAYLQKGGTP----------------------APGCCNGVKSLVGAAQTTADKQAVCNCLKGAAGQVPGLNN----------QYAQSLPSLCGVNIPYKISTSTNCASIKF
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSC--GVRCMRQTRTN------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28749 for 568 contacts (-50.6/contact) +
2D Compatibility (PS) -7597 + (NN) -1043 + (LL) 1268
1D Compatibility (HY) -2000 + (ID) 1050
Total energy: -39171.0 ( -68.96 by residue)
QMean score : 0.262
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: