Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------AIGCGTVVS---YLNPCLPYVTNK--------------GPLGSCCGGVKGLYGAAQTAQDRQSVCSCLKSLA-----GSYKDVDLNKAAGLPGQCGVNIPYKISPSTDCSKVN
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL--------DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-------SQPCQM--
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47231 for 511 contacts (-92.4/contact) +
2D Compatibility (PS) -7293 + (NN) 1123 + (LL) 1012
1D Compatibility (HY) -6000 + (ID) 950
Total energy: -59339.0 ( -116.12 by residue)
QMean score : 0.181
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: