Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------LTCGQVTST--LAPCLPYLMNRG-------------------PLGGCCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLD-----------LGKAASLPSTCSVNIPYK---ISPSTDCSKVQ
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNE--------MENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS---
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26890 for 495 contacts (-54.3/contact) +
2D Compatibility (PS) -7754 + (NN) -20 + (LL) 1044
1D Compatibility (HY) -2000 + (ID) 900
Total energy: -36520.0 ( -73.78 by residue)
QMean score : 0.138
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: