Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APCNPVELSPCLAAISGSQPPSAECCSKLKE-----------QVPCFCDYVKNPVFKPYVDSPNAKKVAATCGVAFPTC
1SIY Chain:A ((7-78))
----QGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR-GINPNNAEALPGKCGVNIP--
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16467 for 395 contacts (-41.7/contact) +
2D Compatibility (PS) -6019 + (NN) -1921 + (LL) -52
1D Compatibility (HY) -3200 + (ID) 650
Total energy: -28309.0 ( -71.67 by residue)
QMean score : 0.350
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: