Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--ALSAAQCKEERRLGLNACKPVIYGKLPSP----------ACCERVRVSHVECVCPVITPKLAALIDLDR----AIRLIEGCGRRVPRHFKCGSITTP
3M8E Chain:A ((-15-102))
FYTLNIAEIAE--RIGNDDCAYQVLMAFINENGEAQMLNKTAVAEMIQLSKPTVFATVNSFYCAGYIDETRVGRSKIYTLSDLGVEIVECFKQKAMEMR
General information:
TITO was launched using:
RESULT:
Template:
3M8E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1672 for 498 contacts (-3.4/contact) +
2D Compatibility (PS) -8007 + (NN) 891 + (LL) 204
1D Compatibility (HY) 4400 + (ID) 150
Total energy: -4334.0 ( -8.70 by residue)
QMean score : 0.057
(partial model without unconserved sides chains):
PDB file :
Tito_3M8E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M8E-query.scw
PDB file :
Tito_Scwrl_3M8E.pdb
: