Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------ITCGQV--SSNLAPCIPYVR------------------GGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVN-----PNNAAALPGKCGVNIPYQISPSTNCANVK
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMEN--TQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26394 for 558 contacts (-47.3/contact) +
2D Compatibility (PS) -8987 + (NN) -332 + (LL) 320
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -38043.0 ( -68.18 by residue)
QMean score : 0.285
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: