Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCSP--VQLSSCVSAITSSTPPSNLCCSKIKE-----------QRPCLCQYMKNPNLRKFVNTPNARKVANTCGTPFPRC
1SIY Chain:A ((2-78))
-TCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR-GINPNNAEALPGKCGVNIP--
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12725 for 414 contacts (-30.7/contact) +
2D Compatibility (PS) -6424 + (NN) -1399 + (LL) 412
1D Compatibility (HY) -3600 + (ID) 800
Total energy: -24536.0 ( -59.27 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: