Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQTCAGQLRGLAPCLRYSVPPLPGQVPPAPGPECCSALGAVSRDCACGTFS-----------IINSLPAKCALPPVSCQ
1N89 Chain:A ((4-67))
-------ASQLAVCASAILSGA------KPSGECCGNLRAQQ-GCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC-
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34882 for 318 contacts (-109.7/contact) +
2D Compatibility (PS) -5502 + (NN) -4578 + (LL) 380
1D Compatibility (HY) -400 + (ID) 700
Total energy: -45682.0 ( -143.65 by residue)
QMean score : 0.222
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: