Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGACGKSSPDSQALKLIPCATAASDKNAAVSSSCCLQVKKIIQ---N-----PSCLCAVVLSNMAKFS-GVNPEIAITIPERCNFADRPVGFKCGAYTLP
1AFH Chain:A ((3-80))
-------SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNA-AAGVSGLNAGNAASIPSKCGVSIP------------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28594 for 494 contacts (-57.9/contact) +
2D Compatibility (PS) -7116 + (NN) -2399 + (LL) 864
1D Compatibility (HY) -1200 + (ID) 900
Total energy: -39345.0 ( -79.65 by residue)
QMean score : 0.258
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: