Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGACGKTSPDQEAMKLAPCAMAAQDAKAAVSDSCCAQVRSIGQ--------NPSCLCSVMLSDMAKAS-GIKAEIAITIPKRCNIANRPVGYKCGDYTLP
1BWO Chain:A ((2-78))
-------DCGHVDSLVRPCLSYVQGG-PGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIA---RGIHNLNEDNARSIPPKCGVNLP------------
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30260 for 440 contacts (-68.8/contact) +
2D Compatibility (PS) -6805 + (NN) -494 + (LL) 480
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -39729.0 ( -90.29 by residue)
QMean score : 0.319
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: