Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------LTCPEV--SKALVPCVTYLATG-----------------------SSFVHCCTQIRLLNSKANTTSDRQGVCRCLTSLAAQFQRRHRLN-------FNLVKQLPGKCNVNIRYNITTQNPNCSQVK
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN--------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51328 for 584 contacts (-87.9/contact) +
2D Compatibility (PS) -7778 + (NN) -1968 + (LL) 200
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -63224.0 ( -108.26 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: