Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------QRVCGMSKEG---FQACEPSVSSANPHPPPPSP---------ACCMALNDADLQCFC-----FFKNSKMLNAYGIDFDRATALPVQCNLVKSFHC--
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQ-PCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30028 for 467 contacts (-64.3/contact) +
2D Compatibility (PS) -7808 + (NN) -4073 + (LL) 132
1D Compatibility (HY) -6800 + (ID) 950
Total energy: -49527.0 ( -106.05 by residue)
QMean score : 0.344
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: