Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---ASTPSSNCESAQMK---LVPCLTYVTGSDSKPPT------------ECCSGLKDLNTNNPTCLCQLITQL--NSTSSGSSNVNVAKVLALPRDCSVTLITSDCPGKDLL
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD---EKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM--SQPCQM----
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38078 for 550 contacts (-69.2/contact) +
2D Compatibility (PS) -9137 + (NN) -8485 + (LL) 612
1D Compatibility (HY) -4800 + (ID) 850
Total energy: -60738.0 ( -110.43 by residue)
QMean score : 0.282
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: