Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------AGCDILKLTPCVAASRNAKVMPS------------RQCCSNIAGMGKGLPGAKCLCSLLSH-----PLARSQGVAPRIALGIPQKCRIAVPRGFVCQGIRVPGS
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD-----EKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQP---CQM------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47104 for 477 contacts (-98.8/contact) +
2D Compatibility (PS) -7037 + (NN) 691 + (LL) 64
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -56486.0 ( -118.42 by residue)
QMean score : 0.140
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: