Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----SDACTGLPGLL----NCAPFLLGSVSSPDAK-CCKSLKWLSQHA-INRKDKRELCKCLKVEDLKHKGVILDRAKSLPRLCKVQ---LPAPLIPDNIDCDKIKAADEE-------
2HW4 Chain:A ((18-141))
LYFQSMDLALIPDVDIDSDGVFKYVLIRVHSAESKEIVRGYKWAEYHADIYDKVSGDMQK--QGCDCECLGGGRISHQSQDKKIHVYGYSMAYGPAQHAISTEKIKAKYPDYEVTWAN
General information:
TITO was launched using:
RESULT:
Template:
2HW4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9500 for 671 contacts (-14.2/contact) +
2D Compatibility (PS) -10047 + (NN) -17 + (LL) 232
1D Compatibility (HY) -3200 + (ID) 1100
Total energy: -23632.0 ( -35.22 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_2HW4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HW4-query.scw
PDB file :
Tito_Scwrl_2HW4.pdb
: