Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----QQQPANCNGQLNQ---LIPCLSYVQGQAT------------QPAQGCCSGLKSIAGSNPACLCSLISA-----NAGSIPGINSTLALELPAKCNLQGLNPSLCSGKF
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIEC---NLMSQPCQM--
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50531 for 525 contacts (-96.2/contact) +
2D Compatibility (PS) -8119 + (NN) -1349 + (LL) 356
1D Compatibility (HY) -5600 + (ID) 950
Total energy: -66193.0 ( -126.08 by residue)
QMean score : 0.331
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: